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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43866795_43868039_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43866795 - 43868039
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
CCCCTACTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGATCAATT
Flanking Amino Acid:
DLSSRKKHSLALYPLITCLL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1
67.5
33.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
67
0.38
0.8
61.3
27.8
Minor 5ss
45.8
-0.4
2.5
54.9
44.6
Minor BPS
49.5
0.04
2.2
75.99
40.7

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600