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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43871573_43872006_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43871573 - 43872006
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATGCCAATAATT
Flanking Amino Acid:
AEVTGVLAQSKFQAVRKKFV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.1
0.63
0.9
76.6
36.9
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
49.6
0.05
1.9
70.45
40.1

Associated Gene:

Gene:
FRYL
Ensembl Gene ID:
ENSAPLG00000004113
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004387
43793406 - 43889005
95600