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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4388391_4391006_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4388391 - 4391006
Intron Length:
2616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
CTTCCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCTTGAACC
Flanking Amino Acid:
KKKKEKVEKKGEKKEKKQQP
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.3
0.61
0.8
73.2
30.2
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
79.7
0.91
1.2
87.35
28.9

Associated Gene:

Gene:
AIMP1
Ensembl Gene ID:
ENSAPLG00000006022
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006253
4367621 - 4400577
32957