Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4394265_4400410_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4394265 - 4400410

Intron Length:

6146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTGTTTTGAAAC

Flanking Amino Acid:

GDRITFEGFPGDPEKELNPK

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

77.1

37.8

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

70.1

0.45

1.1

66.4

43.3

Minor 5ss

42.2

-0.9

2.9

56.1

42.2

Minor BPS

57.8

0.23

1.5

67.85

37.7

Associated Gene:

Gene:

AIMP1

Ensembl Gene ID:

ENSAPLG00000006022

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006253

4367621 - 4400577

32957