Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43966654_43967171_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

43966654 - 43967171

Intron Length:

518

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGGCG

5'SS Class:

major

3'SS Sequence:

TCCCCGATAAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

GGGEVGEPHENVAPKPYMPT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

62.3

41.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

52.5

0.06

1.1

52.5

34.4

Minor 5ss

28.5

-2.5

3.6

38.6

46.6

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

OCIAD1

Ensembl Gene ID:

ENSAPLG00000027836

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033444

43966603 - 44031107

64505

ENSAPLT00000032174

43966603 - 43978751

12149