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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43967257_43970423_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43967257 - 43970423
Intron Length:
3167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TATATTTTAAGC
Flanking Amino Acid:
ECADESARYRAFPLAAASML
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
89
0.88
0.6
84
24.2
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
58.7
0.25
1.6
67.51
38.2

Associated Gene:

Gene:
OCIAD1
Ensembl Gene ID:
ENSAPLG00000027836
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033444
43966603 - 44031107
64505
ENSAPLT00000032174
43966603 - 43978751
12149