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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43970478_43970943_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43970478 - 43970943
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATTAATT
Flanking Amino Acid:
MLATTFLIKKGILRETSRFG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.3
0.75
0.8
80.6
30.2
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
71.1
0.74
1.5
85.74
34

Associated Gene:

Gene:
OCIAD1
Ensembl Gene ID:
ENSAPLG00000027836
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033444
43966603 - 44031107
64505
ENSAPLT00000032174
43966603 - 43978751
12149