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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43977880_43980512_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43977880 - 43980512
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GATTTAATAACA
Flanking Amino Acid:
KLPQEKPAKEVKVNKHRERC
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.7
0.87
0.6
88.9
20.4
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
52.6
0.08
1.9
67.71
37.7

Associated Gene:

Gene:
OCIAD1
Ensembl Gene ID:
ENSAPLG00000027836
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033444
43966603 - 44031107
64505