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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43990561_43991307_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
43990561 - 43991307
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTTGTGGTAATC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
85.3
32.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75
0.56
0.9
68.8
36.4
Minor 5ss
38.9
-1.2
3.1
53.5
43.9
Minor BPS
41.9
-0.6
2.5
56.43
43.4

Associated Gene:

Gene:
OCIAD2
Ensembl Gene ID:
ENSAPLG00000026944
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036416
43990282 - 43998713
8432