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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43991396_43992449_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43991396 - 43992449
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TTCTATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AAATTCTTGAGT
Flanking Amino Acid:
QKSGYGPKKKRHCHHVCKEC
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.9
0.65
0.8
74.3
34.8
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
58
0.33
1.6
70.42
40.4

Associated Gene:

Gene:
OCIAD2
Ensembl Gene ID:
ENSAPLG00000026944
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036416
43990282 - 43998713
8432