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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43992547_43993261_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43992547 - 43993261
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TGTGCATTAATG
Flanking Amino Acid:
PKLGALPKMAIAGVLGFGIG
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
84.5
0.78
0.7
80.6
31.5
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
59.3
0.15
1.8
65.31
42.6

Associated Gene:

Gene:
OCIAD2
Ensembl Gene ID:
ENSAPLG00000026944
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036416
43990282 - 43998713
8432