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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_43993310_43995348_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43993310 - 43995348
Intron Length:
2039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTCAATTGAAT
Flanking Amino Acid:
MLVAQGLVSKGILSANPKLG
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.4
0.86
0.6
84.9
22.7
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
47.3
-0.1
1.9
68.42
41.8

Associated Gene:

Gene:
OCIAD2
Ensembl Gene ID:
ENSAPLG00000026944
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036416
43990282 - 43998713
8432