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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44017868_44019812_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44017868 - 44019812
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGCTTTAAAAT
Flanking Amino Acid:
FKRSKKYIKLLLWLFVGVGL
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
87.1
30
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
73.9
0.54
1
71.9
38
Minor 5ss
40.7
-1
2.8
50.6
39.2
Minor BPS
49.9
0.07
1.7
69.73
41.5

Associated Gene:

Gene:
CWH43
Ensembl Gene ID:
ENSAPLG00000003773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040763
44006085 - 44031107
25023
ENSAPLT00000033117
44006085 - 44031107
25023
ENSAPLT00000003851
44001598 - 44031107
29510