About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44019893_44021109_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44019893 - 44021109
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCATAATTAACT
Flanking Amino Acid:
KAYEKKLGQGVPKRDFSAMI
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.3
0.48
1.7
84.7
35.8
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
62.7
0.48
1.8
79.43
41.9

Associated Gene:

Gene:
CWH43
Ensembl Gene ID:
ENSAPLG00000003773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033117
44006085 - 44031107
25023
ENSAPLT00000003851
44001598 - 44031107
29510
ENSAPLT00000040763
44006085 - 44031107
25023