About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44026600_44027653_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44026600 - 44027653
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGAATCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTCTTGAATC
Flanking Amino Acid:
CSYIMYRGVIRLGYARISHA
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
66.8
0.38
1.1
61.5
44.2
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
69.4
0.59
1.4
74.76
36.3

Associated Gene:

Gene:
CWH43
Ensembl Gene ID:
ENSAPLG00000003773
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033117
44006085 - 44031107
25023
ENSAPLT00000003851
44001598 - 44031107
29510
ENSAPLT00000040763
44006085 - 44031107
25023