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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44034714_44042793_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44034714 - 44042793
Intron Length:
8080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTCTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CAATTTAAAACT
Flanking Amino Acid:
MHSDGAAVNFQLNSHLST
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.4
0.71
0.7
74.1
31.1
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
46.3
-0.2
1.9
62.03
42.1

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028494
44034689 - 44068312
33624
ENSAPLT00000003510
44034689 - 44068830
34142
ENSAPLT00000038993
44034689 - 44068312
33624