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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44042865_44043774_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44042865 - 44043774
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGACT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TCTTGTTTAACT
Flanking Amino Acid:
HKIYHTLNRLNLTEDVGQDD
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.7
39
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
35.1
-1.7
3.2
47.1
42.5
Minor BPS
72.6
0.79
1.7
87.23
39

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038993
44034689 - 44068312
33624
ENSAPLT00000028494
44034689 - 44068312
33624
ENSAPLT00000003510
44034689 - 44068830
34142