About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44043815_44049778_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
44043815 - 44049778

Intron Length:
5964

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATTTAAT

5'SS Class:
strong_major

3'SS Sequence:
TCTCCTATAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTACAT

U12 Branch Point Sequence:
TCTCCTATAACA

Flanking Amino Acid:
EDVGQDDHQTGERLSKIRRI

Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.4
0.72
1
81.6
31.4

Major BPS
70.4
0.51
1.1
78.7
33.6

Major PPT
74.5
0.55
0.9
70
33.8

Minor 5ss
43.6
-0.7
2.6
59.8
44.7

Minor BPS
63.5
0.42
1.6
73.7
37.9

Associated Gene:

Gene:
DCUN1D4

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

44034689 - 44068312
33624

44034689 - 44068830
34142