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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44051250_44060122_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44051250 - 44060122
Intron Length:
8873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
DLSAKKSRHDGMYRKYDSTR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.6
41.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
41.5
-0.9
2.8
50
46.3
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038993
44034689 - 44068312
33624
ENSAPLT00000028494
44034689 - 44068312
33624
ENSAPLT00000003510
44034689 - 44068830
34142