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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44062694_44063587_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44062694 - 44063587
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TTTCTCTTAAAC
Flanking Amino Acid:
CEDIGVEPENVVMLVLAWKL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
69.9
0.49
1
61.3
37
Major PPT
76.3
0.59
0.9
73.6
34.7
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
74.1
0.74
1.3
81.08
32.4

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038993
44034689 - 44068312
33624
ENSAPLT00000028494
44034689 - 44068312
33624
ENSAPLT00000003510
44034689 - 44068830
34142