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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44063680_44064447_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44063680 - 44064447
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TATGCTGTAAAT
Flanking Amino Acid:
QEWLKGMTSLQCDTTEKLRN
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
81.9
0.72
0.8
77.2
31.5
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
49.9
0.07
2.2
73.99
42.9

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038993
44034689 - 44068312
33624
ENSAPLT00000028494
44034689 - 44068312
33624
ENSAPLT00000003510
44034689 - 44068830
34142