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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44068103_44068561_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44068103 - 44068561
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTAAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTCAGTAATT
Flanking Amino Acid:
LFPVFHQFLEQSKYKVINKD
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
69.9
0.45
1
66.9
38.3
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
58.4
0.34
2.2
83.58
37.4

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003510
44034689 - 44068830
34142