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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44068665_44068774_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44068665 - 44068774
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GATCTCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTTGTAAAAT
Flanking Amino Acid:
DLSNYDEDGAWPVLLDEFVE
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76.7
0.6
0.9
69.2
36.7
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
48.3
-0
2.4
74.89
42

Associated Gene:

Gene:
DCUN1D4
Ensembl Gene ID:
ENSAPLG00000003414
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003510
44034689 - 44068830
34142