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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44080346_44082675_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44080346 - 44082675
Intron Length:
2330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAAACATAAAAT
Flanking Amino Acid:
ERNYLSAVPRGLGLLQSLQS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.2
0.59
0.8
69.5
36.8
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
45
-0.3
2
60.49
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024904
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030159
44075539 - 44083173
7635