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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44086713_44087431_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44086713 - 44087431
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TCTTTCTTAATA
Flanking Amino Acid:
RMGGNMELKAENSIILNGTV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
80
0.67
0.8
77.5
29.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
81.3
0.98
1
82.43
32.9

Associated Gene:

Gene:
SGCB
Ensembl Gene ID:
ENSAPLG00000003393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003469
44086509 - 44093322
6814