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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44088935_44089045_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44088935 - 44089045
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
ACTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTAACATAAAAT
Flanking Amino Acid:
DLVITGNNQPIVFQQGTTKL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
86.2
0.81
0.7
81.2
30.1
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
48.9
-0
2
72.62
43.3

Associated Gene:

Gene:
SGCB
Ensembl Gene ID:
ENSAPLG00000003393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003469
44086509 - 44093322
6814