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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44089232_44090068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44089232 - 44090068
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AATCTTTGAAAA
Flanking Amino Acid:
LFILAVINLIITLVIWAVIR
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
49.2
-0
1.4
58.6
33.8

Associated Gene:

Gene:
SGCB
Ensembl Gene ID:
ENSAPLG00000003393
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003469
44086509 - 44093322
6814