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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44092451_44094317_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44092451 - 44094317
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
CATTAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATGCATTAATT
Flanking Amino Acid:
KLENWYRDYEINTCDQNLNR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77
0.61
0.9
69.3
40.3
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
67
0.61
1.7
82.44
38.8

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355