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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44094424_44094530_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44094424 - 44094530
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AATTTCTTAATG
Flanking Amino Acid:
FTILNETSREGGHYAGVETI
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78.3
0.64
0.8
77.2
36.9
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
73.7
0.61
1.2
70.6
36.6

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355