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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44094647_44097324_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44094647 - 44097324
Intron Length:
2678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGG
5'SS Class:
major
3'SS Sequence:
TGTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGTGTTTCATT
Flanking Amino Acid:
LFESGLSFIQDSVEKERQLR
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.3
46
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
44.9
-0.6
2.6
57.4
46.9
Minor BPS
50.4
0.09
2.2
74.76
43.2

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355