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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44097444_44101122_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44097444 - 44101122
Intron Length:
3679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGGGAAA
5'SS Class:
major
3'SS Sequence:
CCATGTGGTTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTGTGACTAACT
Flanking Amino Acid:
TRLELDHVQQDLKDSRVREE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.1
59.5
41.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
52.7
0.06
1.2
55.4
43.7
Minor 5ss
31.5
-2.1
3.4
35
42.6
Minor BPS
49.3
0.03
2.3
77.96
44

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355