Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44101258_44101825_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44101258 - 44101825

Intron Length:

568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCCT

5'SS Class:

major

3'SS Sequence:

ACACCTCTCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

TCTCTCTTTACA

Flanking Amino Acid:

LDAKKSVLQSRLVRSRSPSP

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

44.2

Major BPS

72.8

0.57

30.3

Major PPT

63.4

0.3

0.8

54.6

35.6

Minor 5ss

-2.1

3.6

47.9

47.8

Minor BPS

63.3

0.41

1.6

72.36

39.3

Associated Gene:

Gene:

SPATA18

Ensembl Gene ID:

ENSAPLG00000003130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003182

44091940 - 44107294

15355