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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44102058_44102831_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44102058 - 44102831
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TGTACATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
ATCTCCTGGATT
Flanking Amino Acid:
VQRIIYTAAVESFQTAKMAY
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
59.4
39.7
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
76.3
0.59
1
66.3
44.1
Minor 5ss
28.3
-2.5
3.7
35
43.6
Minor BPS
65.1
0.56
1.5
77.99
38.6

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355