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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44102991_44103531_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44102991 - 44103531
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAATT
Flanking Amino Acid:
DLYDVQASVNEVIRSMNMNP
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
42
-0.9
2.8
53.8
43.6
Minor BPS
58.2
0.34
1.5
74.78
36.3

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355