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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44106474_44106684_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44106474 - 44106684
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCCCC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
CACATCTGAATT
Flanking Amino Acid:
SRSVSPLLSHLSRSRSPSPL
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
62.7
42.1
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
41.6
-0.9
3
57.1
40.3
Minor BPS
50.8
0.1
1.5
62.08
42.2

Associated Gene:

Gene:
SPATA18
Ensembl Gene ID:
ENSAPLG00000003130
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003182
44091940 - 44107294
15355