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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44250160_44253647_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
44250160 - 44253647
Intron Length:
3488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGGCC
5'SS Class:
major
3'SS Sequence:
CCATCTGTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
63.1
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.3
0.37
1
61
38.8
Minor 5ss
25.1
-2.9
3.3
33.3
42.1
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
USP46
Ensembl Gene ID:
ENSAPLG00000003005
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024886
44249645 - 44277011
27367