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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44253798_44254778_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44253798 - 44254778
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATCT
Flanking Amino Acid:
WLLFDDDIVEKIDAQAIEEF
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.8
78
35.4
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
61.5
0.44
1.8
80.49
41.6

Associated Gene:

Gene:
USP46
Ensembl Gene ID:
ENSAPLG00000003005
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024886
44249645 - 44277011
27367
ENSAPLT00000003058
44253696 - 44276539
22844