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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44254858_44255342_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44254858 - 44255342
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
DLVAVVVHCGSGPNRGHYIT
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.7
0.82
0.7
85.4
29.4
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
USP46
Ensembl Gene ID:
ENSAPLG00000003005
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024886
44249645 - 44277011
27367
ENSAPLT00000003058
44253696 - 44276539
22844