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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44255911_44259910_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44255911 - 44259910
Intron Length:
4000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTTACA
Flanking Amino Acid:
EQNTSITHCLRDFSNTETLC
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.9
0.83
0.8
81
35.3
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
57.8
0.24
1.9
73.37
38.2

Associated Gene:

Gene:
USP46
Ensembl Gene ID:
ENSAPLG00000003005
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024886
44249645 - 44277011
27367
ENSAPLT00000003058
44253696 - 44276539
22844