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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44266671_44276975_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44266671 - 44276975
Intron Length:
10305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTACATTAATT
Flanking Amino Acid:
VRNIASICNMGTNASALEKD
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.7
0.71
0.7
80.6
24.7
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
67.6
0.63
1.6
81.97
39.5

Associated Gene:

Gene:
USP46
Ensembl Gene ID:
ENSAPLG00000003005
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024886
44249645 - 44277011
27367