About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44319743_44323907_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44319743 - 44323907
Intron Length:
4165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAACA
5'SS Class:
major
3'SS Sequence:
ACCCTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACC
Flanking Amino Acid:
LVATRKPGTQVLVLSTALLT
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.7
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.8
0.67
0.8
76.7
31.3
Minor 5ss
31.7
-2.1
3.2
40.9
45.1
Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
SCFD2
Ensembl Gene ID:
ENSAPLG00000022972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043700
44318091 - 44507811
189721