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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44324028_44329546_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44324028 - 44329546
Intron Length:
5519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
LKTGFSMFMKVNRPHPGDHP
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.3
34.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
34.4
-1.8
2.8
41.5
45.1
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
SCFD2
Ensembl Gene ID:
ENSAPLG00000022972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043700
44318091 - 44507811
189721