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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44329682_44333439_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44329682 - 44333439
Intron Length:
3758

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
AAAGCCTTACTC
Flanking Amino Acid:
IHNPGSNTHQASYKPLLKQV
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
86.4
0.82
0.8
84.2
30.7
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
52.1
0.05
1.7
58.65
40.4

Associated Gene:

Gene:
SCFD2
Ensembl Gene ID:
ENSAPLG00000022972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043700
44318091 - 44507811
189721