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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44333586_44423333_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44333586 - 44423333
Intron Length:
89748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTCCTTATTA
Flanking Amino Acid:
EPSPLLQKITGCDSAQNLTS
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.9
34.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77
0.61
0.8
74.9
34.6
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
73
0.72
1.5
80.17
35.9

Associated Gene:

Gene:
SCFD2
Ensembl Gene ID:
ENSAPLG00000022972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043700
44318091 - 44507811
189721