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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44423584_44454542_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44423584 - 44454542
Intron Length:
30959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTACT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TAGGTGCTAACT
Flanking Amino Acid:
FLAFERLLLQSIGESEMPNV
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
78.4
35.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
39
-1.2
3
52.4
38.3
Minor BPS
44.6
-0.3
2.3
64.99
45.5

Associated Gene:

Gene:
SCFD2
Ensembl Gene ID:
ENSAPLG00000022972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043700
44318091 - 44507811
189721