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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44473130_44501843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44473130 - 44501843
Intron Length:
28714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAACATT
5'SS Class:
major
3'SS Sequence:
CATTTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTTTCTTATAG
Flanking Amino Acid:
IIAPGCLAQPNDPAAKALWE
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
77.9
36.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
82
0.72
0.8
76.8
31.6
Minor 5ss
46.4
-0.4
3
66.4
38.9
Minor BPS
59.1
0.15
1.8
66.72
40.9

Associated Gene:

Gene:
SCFD2
Ensembl Gene ID:
ENSAPLG00000022972
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043700
44318091 - 44507811
189721