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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44511070_44511287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44511070 - 44511287
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGGG
5'SS Class:
major
3'SS Sequence:
TTCTGTCTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTCTATTCACG
Flanking Amino Acid:
GQAGCKRAEGDENEAERPEE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
60.9
43.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.3
0.61
0.8
73.1
31.8
Minor 5ss
34.5
-1.8
2.9
41.3
45.1
Minor BPS
46.9
-0.3
2.1
57.31
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039333
44510807 - 44540449
29643