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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44521025_44521310_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44521025 - 44521310
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTACT
5'SS Class:
major
3'SS Sequence:
TTATTTAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTATTTAACT
Flanking Amino Acid:
PVTSTTNKITAEDNAMEVTP
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
77.6
36.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.6
0.49
0.9
71.6
38.2
Minor 5ss
38.9
-1.2
2.8
53.9
42.7
Minor BPS
76.9
0.92
1.4
89.9
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039333
44510807 - 44540449
29643
ENSAPLT00000017943
44510392 - 44554389
43998
ENSAPLT00000003131
44510392 - 44554566
44175
ENSAPLT00000041552
44509397 - 44554574
45178