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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44521380_44523990_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44521380 - 44523990
Intron Length:
2611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CGTTATTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTTATTTTGAAG
Flanking Amino Acid:
ILDGRYHLFKVQQGRTGNLE
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.8
86.3
23.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
71
0.47
1.1
71.2
38.4
Minor 5ss
40
-1.1
3.1
57.8
46.8
Minor BPS
49.8
-0.1
1.5
56.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039333
44510807 - 44540449
29643
ENSAPLT00000017943
44510392 - 44554389
43998
ENSAPLT00000003131
44510392 - 44554566
44175
ENSAPLT00000041552
44509397 - 44554574
45178