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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44524101_44526498_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44524101 - 44526498
Intron Length:
2398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCTCACCA
Flanking Amino Acid:
ALLKSGIPTNRNSASSQSQT
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.2
74.9
38.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
77.8
0.63
0.9
71.3
39.4
Minor 5ss
35
-1.7
2.7
40.6
45.6
Minor BPS
54.7
0.14
1.9
71.99
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017943
44510392 - 44554389
43998